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Processing and Analysis of Biological Data BIOS15

7,5 credits The course code was BIOS14 earlier The course is given part time (50%) with lectures in the mornings and exercises in the afternoons two days a week during November–January. Participants may need to spend some time for the exercises between scheduled events. For your planning, you will have access to the exercises in advance. The course can be taken in parallel to BIOS13 Modelling Biol

https://www.biologyeducation.lu.se/education/courses/advanced-level-courses/processing-and-analysis-biological-data-bios15 - 2026-09-09

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In this paper the characteristics of the primary breakup of a liquid jet is analyzed numerically. We applied the Volumes of Fluids (VOF) approach utilizing the Direction Averaged Curvature (DAC) model, to estimate the interface curvature, and the Direction Averaged Normal (DAN) model, to propagate the interface. While being used for the first time to predict liquid atomization, this methodology sh

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This paper develops a very simple test for the null hypothesis of no cointegration in panel data. The test is general enough to allow for heteroskedastic and serially correlated errors, unit-specific time trends, cross-sectional dependence and unknown structural breaks in both the intercept and slope of the cointegrated regression, which may be located at different dates for different units. The l

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This paper develops a very simple test for the null hypothesis of no cointegration in panel data. The test is general enough to allow for heteroskedastic and serially correlated errors, unit-specific time trends, cross-sectional dependence and unknown structural breaks in both the intercept and slope of the cointegrated regression, which may be located at different dates for different units. The l

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A technique for optical control of the spatial distribution of laser-accelerated ion beams is presented. An ultra-short laser pulse, tightly focused to relativistic intensities on a thin foil target, drives a beam of MeV ions. An auxiliary, nanosecond laser pulse drives a shock and locally deforms the initially flat target prior to the main pulse interaction. By changing the properties of the shoc

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Water mist systems have seen an increase in use as an alternative clean agent fire suppressant since the late 1980s after the use of Halon gases were discontinued. One of the potential uses of these systems is to provide a protective curtain between a fire and desired target. The following experimental work investigates the radiation attenuation abilities of a single water mist spray. These experi

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Popular Abstract in Swedish I avhandlingen studeras plasminogenaktiverings-systemets (PA-systemets) komponenter i livmoderslemhinnan. PA-systemet reglerar omvandlingen av plasminogen till plasmin. Plasminogen är ett inaktivt enzym som finns överallt i kroppsvätskor samt i kroppens olika organ. Aktiveringen katalyseras av aktivatorer, antingen urokinase plasminogen activator (uPA) eller tissue plasThe release of urokinase plasminogen activator (uPA) from endometrial stromal cells decreased after progesterone stimulation, due to upregulation of PA inhibitor 1 (PAI-1) and uPA receptor (uPAR). Subsequently, the uPA:PAI-1 complex was internalized and degraded via uPAR. Predecidual cells in the late secretory phase expressed PAI-1 and uPAR, supporting a specific role for predecidual cells in the

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One of the most common types of bridges in Sweden is the integral bridge. What characterizes the integral bridge is the lack of bearings and expansion joints. The advantage of this construction is that the horizontal forces can be distributed throughout the structure. A problem is the restraint forces that occur due to, for instance, changes in temperature. Integral bridges are now often designed

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T-1-family conotoxins belong to the T-superfamily and are composed of 10-17 amino acids. They share a common cysteine framework and disulfide connectivity and exhibit unusual posttranslational modifications, such as tryptophan bromination, glutamic acid carboxylation, and threonine glycosylation. We have isolated and characterized a novel peptide, Mo1274, containing 11 amino acids, that shows the

Farrukh Javed

Senior lecturer Contact details Email: farrukh [dot] javed [at] stat [dot] lu [dot] seOrganisation Department of Statistics Room number: EC1: 356 Service point: 10 WebpageFarrukh Javeds profile in Lund University research portalOther affiliations Project manager Department of Statistics Member of Strategic Research Area eSSENCE: The e-Science Collaboration Publications Displaying of publications.

https://www.lusem.lu.se/farrukh-javed - 2026-09-09

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A resampling method for quantitative MRS is presented that retains absolute concentrations. Averaging the spectra from a subset improved the concentrationestimates via increased SNR. Using short-TE STEAM spectra from human thalamus, the influence of subset size was systematically studied and verifiedagainst conventional bootstrap re-sampling. Even small subsets provided considerably better signal-

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The concept of multiple partonic interactions in hadronic events is vital for the understanding of both minimum-bias and underlying-event physics. The area is rather little studied, however, and current models off er a far from complete coverage, even of the effects we know ought to be there. In this article we address one such topic, namely that of rescattering, where an already scattered parton

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Eighty basal cell carcinomas (BCCs) in 21 patients, 10 lesions of Bowen's disease in three patients, and four lesions of cutaneous T-cell lymphoma in two patients, were treated with photodynamic laser therapy (PDT), using topical application of the haem precursor delta-amino levulinic acid (ALA). The diagnoses were confirmed histologically prior to treatment. Fifty-five of the BCCs were superficia

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The bone marrow hematopoietic microenvironment (HME) plays a pivotal role in regulating normal and diseased hematopoiesis. However, the spatial organization of the human HME has not been thoroughly investigated yet. Therefore, we developed a three-dimensional (3D) immunofluorescence model to analyze changes in the cellular architecture in control and diseased bone marrows (BMs). BM biopsies from p

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Studded tyres wear surfaces of winter roads, generating inhalable airborne particles. In this study, four concrete road materials and two stud geometries were investigated in terms of wear, road material hardness and airborne particle concentration. The sliding contact between studded tyres and road materials was studied using a pin-on-disc machine in a clean chamber. The results show that the nor

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BACKGROUND: Cobalamin/folate deficiency is common in elderly subjects and may lead to psychiatric symptoms, but even more often it increases the severity of other organic and non-organic mental diseases. It is therefore of importance to evaluate the optimal use of different markers of cobalamin/folate status in a psychogeriatric population. METHODS: We measured serum cobalamin, blood folate, plasm

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OBJECTIVE: Left heart failure (LHF) is a common and frequently overlooked condition owing to insufficient diagnostic methods. This can potentially delay onset of treatment. Our clinical experience with ventilation/perfusion single photon emission computed tomography (V/P SPECT) indicates that perfusion shows an antigravitational distribution pattern in LHF. The aim of the study was to test the hyp

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Objective. In systemic sclerosis (SSc; scleroderma), T cells infiltrate organs undergoing fibrotic changes and may participate in dysregulated production of collagen by fibroblasts. The objective of this study was to functionally characterize T cells infiltrating skin lesions in early SSc and investigate their capacity to affect production of type I collagen and interstitial collagenase (matrix me