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Quality Control for high-throughput Quantitative Proteomics - Harnessing the potential of label-free LC-MS

Popular Abstract in Swedish Sedan kartläggningen av det mänskliga genomet, har mer fokus lagts på dess produkt, proteomet, som definieras som de proteiner som uttrycks i en cell vid en viss tidpunkt. Proteomets dynamiska egenskaper gör det till en fantastisk källa för så kallade biomarkörer, det vill säga molekyler som genom deras koncentrationsmönster kan användas för att särskilja sjuka och frisMultiplex protein quantification, proteomics, is essential for uncovering new biomarkers and understanding biology. Liquid chromatography coupled to mass spectrometry (LC-MS) is the predominant technique for these measurements. In this thesis, optimization and quality control strategies for different phases of the LC-MS pipeline have been developed. Due to the inherent complexity and dynamic rang

Schindler´s List Comes to Schindler´s Homeland

This text is an analysis of the reception of Steven Spielberg´s film Schindler´s List in the Czech Republic. Being a Sudeten German, Oskar Schindler, the hero of the film and the rescuer of hundreds of Jews from the Nazi destruction machinery, made Czechs aware not only or primarily of the atrocities of the Holocaust, but of several Czech-German troublespots of the past, including those related to

High-resolution calculations of merging neutron stars - III. Gamma-ray bursts

Recent three-dimensional, high-resolution simulations of neutron star coalescences are analysed to assess whether short gamma-ray bursts (GRBs) could originate from such encounters. The two most popular modes of energy extraction - namely the annihilation of and magnetohydrodynamic processes - are explored in order to investigate their viability in launching GRBs. We find that annihilation can pro

The Role of International Organisations in Global Environmental Governance

The organisational network of global environmental governance (GEG) mirrors the complexity of the planet's manifold and overlapping ecosystems. Bursting onto the international stage in the 1970s, environmental issues began to be addressed by a series of new international organisations, most of them affiliated with the United Nations. Some of them, such as the United Nations Environment Programme (

Boundary finding using Fourier surfaces of increasing order

Boundary finding in simulated medical images is performed by optimizing the Fourier coefficients in a parametric surface representation with respect to an objective function. The deformable model is fitted to the data using the brightness gradient component which is normal to the surface. A low order (<10) Fourier series expansion offers a sufficiently accurate representation for many inherently s

Differential effects of IL-1 alpha and IL-1 beta on tumorigenicity patterns and invasiveness

In this study, we show that distinct compartmentalization patterns of the IL-1 molecules (IL-1alpha and IL-1beta), in the milieu of tumor cells that produce them, differentially affect the malignant process. Active forms of IL-1, namely precursor IL-1alpha (pIL-1alpha), mature IL-1beta (mIL-1beta), and mIL-1beta fused to a signal sequence (ssIL-1beta), were transfected into an established fibrosar

Solvent effects on rotatory strength tensors. 1. Theory and application of the combined coupled cluster/dielectric continuum model

In this article we present the first theoretical study of solvent effects on the rotatory strength tensor. The system chosen is solvated formaldehyde for which only one tensor element is nonvanishing, and the solvent is modeled as a linear, homogeneous, and isotropic dielectric continuum. We present results using both an equilibrium and a nonequilibrium description of the solvent. Four illustrativ

Intramolecular Electron Transfer from Manganese(II) Coordinatively Linked to a Photogenerated Ru(III)-Polypyridine Complex: A Kinetic Analysis

For further investigations in the field of artificial photosynthesis, a model compound, 1, has been developed to mimic the electron-transfer steps from the manganese cluster to P680+ in photosystem II. In this model compound the photosensitizer ruthenium(II)-trisbipyridyl was linked to a manganese(II) ion through a bridging ligand. Photoexcitation of 1 in the presence of the electron acceptor meth

Epigenetic Economic Dynamics: The evolution of big internet business ecosystems, evidence for patents

The aim of this article is to contribute to literature with new findings from biogenetics that are becoming increasingly important. In particular, we will discuss the new analytic frameworks that may open as a result of the incorporation of epigenetics in evolutionary economic thinking. This new approach is illustrated by studying the evolution of big Internet industry groups such as Apple, Google

Molecular cloning and expression of human myocardial cGMP-inhibited cAMP phosphodiesterase

We have cloned a cDNA for a myocardial cGMP-inhibited cAMP phosphodiesterase (cGI PDE) from a human heart cDNA library in lambda Zap II. The open reading frame [3.5 kilobases (kb)] of cDNA clone n.13.2 (7.7 kb) encodes a protein of 125 kDa. In Northern blots of total human ventricle RNA, a single mRNA species (8.3 kb) hybridized with a 4-kb EcoRI restriction fragment of clone n.13.2 cDNA (containi

Complement Activation Associated with ADAMTS13 Deficiency in Human and Murine Thrombotic Microangiopathy.

This study addressed the contribution of ADAMTS13 deficiency to complement activation in thrombotic thrombocytopenic purpura (TTP). Renal tissue and blood samples were available from 12 TTP patients. C3 and C5b-9 deposition were demonstrated in the renal cortex of two TTP patients, by immunofluorescence and immunohistochemistry, respectively. C3 was also demonstrated in the glomeruli of Shiga toxi

Aberrant recombination and repair during immunoglobulin class switching in BRCA1-deficient human B cells.

Breast cancer type 1 susceptibility protein (BRCA1) has a multitude of functions that contribute to genome integrity and tumor suppression. Its participation in the repair of DNA double-strand breaks (DSBs) during homologous recombination (HR) is well recognized, whereas its involvement in the second major DSB repair pathway, nonhomologous end-joining (NHEJ), remains controversial. Here we have st

The impact of CCD radiation damage on Gaia astrometry - I. Image location estimation in the presence of radiation damage

The Gaia mission has been designed to perform absolute astrometric measurements with unprecedented accuracy; the end-of-mission parallax standard error is required to be of the order of 10 mu as for the brightest stars (V= 10) and 30 mu as for a G2V-type star of magnitude 15. These requirements set a stringent constraint on the accuracy of the estimation of the location of the stellar image on the