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Escape from nonsense-mediated decay associates with anti-tumor immunogenicity

Frameshift insertion/deletions (fs-indels) are an infrequent but highly immunogenic mutation subtype. Although fs-indels are degraded through the nonsense-mediated decay (NMD) pathway, we hypothesise that some fs-indels escape degradation and elicit anti-tumor immune responses. Using allele-specific expression analysis, expressed fs-indels are enriched in genomic positions predicted to escape NMD,

Development of novel hybridized models for urban flood susceptibility mapping

Floods in urban environments often result in loss of life and destruction of property, with many negative socio-economic effects. However, the application of most flood prediction models still remains challenging due to data scarcity. This creates a need to develop novel hybridized models based on historical urban flood events, using, e.g., metaheuristic optimization algorithms and wavelet analysi

Effects of active farnesoid X receptor on GLUTag enteroendocrine L cells

Activated transcription factor (TF) farnesoid X receptor (FXR) represses glucagon-like peptide-1 (GLP-1) secretion in enteroendocrine L cells. This, in turn, reduces insulin secretion, which is triggered when β cells bind GLP-1. Preventing FXR activation could boost GLP-1 production and insulin secretion. Yet, FXR's broader role in L cell biology still lacks understanding. Here, we show that FXR i

Lipoprotein ability to exchange and remove lipids from model membranes as a function of fatty acid saturation and presence of cholesterol

Lipoproteins play a central role in the development of atherosclerosis. High and low-density lipoproteins (HDL and LDL), known as ‘good’ and ‘bad’ cholesterol, respectively, remove and/or deposit lipids into the artery wall. Hence, insight into lipid exchange processes between lipoproteins and cell membranes is of particular importance in understanding the onset and development of cardiovascular d

Fish in a barrel : Atlantic sturgeon (Acipenser oxyrinchus) from the Baltic Sea wreck of the royal Danish flagship Gribshunden (1495)

In 1495, the royal Danish ship Gribshunden sank in the Baltic Sea, near the town of Ronneby. During archaeological excavations in 2019, a wooden barrel submerged inside the shipwreck revealed the almost complete and well-preserved remains of a sturgeon fish. In this paper, we present the find in terms of species identification, estimation of number of individuals, size reconstruction and butchery

High prevalence of smoking in patients with adrenal incidentalomas : causality or case selection?

Objective: Autonomous cortisol secretion and possible autonomous cortisol secretion (ACS/pACS) are associated to an increase of cardiovascular risk factors such as hypertension, diabetes mellitus and dyslipidaemia. To our knowledge, the prevalence of smoking, another well-established risk factor for cardiovascular disease, has not been studied in detail in people with ACS/pACS or adrenal incidenta

In-Hospital Delays in Stroke Thrombolysis : Every Minute Counts

BACKGROUND AND PURPOSE: Intravenous thrombolysis is a well-established treatment for acute ischemic stroke. Our aim was to quantify the effect of each minute delay in door-to-needle time (DNT) on 90-day survival, intracerebral hemorrhagic complication

Continuous adsorption in food industry: The recovery of sinapic acid from rapeseed meal extract

Efficient recovery and utilization of valuable components from industrial food side streams is a main driver towards a circular economy. Among different available purification techniques, adsorption can effectively recover these components. However, the conventional batch mode of operation can limit its applicability in food processes due to limited efficiency. This work compares conventional batcEfficient recovery and utilization of valuable components from industrial food side streams is a main driver towards a circular economy. Among different available purification techniques, adsorption can effectively recover these components. However, the conventional batch mode of operation can limit its applicability in food processes due to limited efficiency. This work compares conventional batc

First Evidence of Acyl-Hydrolase/Lipase Activity From Human Probiotic Bacteria: Lactobacillus rhamnosus GG and Bifidobacterium longum NCC 2705

Lactobacillus rhamnosus GG (ATCC 53103) and Bifidobacterium longum NCC 2705 are among the most studied probiotics. However, the first evidence of acyl hydrolase/lipase of two annotated proteins, one in each genome of these strains, is reported in this work. Signal peptide analysis has predicted that these proteins are exported to the extracellular medium. Both proteins were produced in Escherichia

Repositioning of fluoroquinolones from antibiotic to anti-cancer agents: An underestimated truth

Increasing development costs and higher failure rate in clinical trials has reduced the repertoire of newer drugs in the market for clinical use. The most appropriate approach to end the search for newer drugs is “Repositioning”, as it requires less time and money to explore new indication of existing drug or failed drug. In the past, several drugs have been repositioned for different indication b

A Grounding Physicalist Solution to the Causal Exclusion Problem

Remember how Kim (Philos Perspect 3:77–108, 1989, in: Heil and Mele (eds) Mental causation, Clarendon Press, Oxford, 1993b) used to argue against non-reductive physicalism to the effect that it cannot accommodate the causal efficacy of the mental? The argument was that if physicalists accept the causal closure of the physical, they are faced with an exclusion problem. In the original version of th

Decreased HLA-DQ expression on peripheral blood cells in children with varying number of beta cell autoantibodies

The risk for type 1 diabetes is strongly associated with HLA-DQ and the appearance of beta cell autoantibodies against either insulin, glutamate decarboxylase (GAD65), insulinoma-associated protein-2 (IA-2), or zinc transporter 8 (ZnT8). Prolonged exposure to autoantibodies may be related to T cell exhaustion known to occur in chronic infections or autoimmune disorders. It was hypothesized that au

Shah of Iran Commemoration

On July 27, 1980, at 9:45 am in Cairo, Egypt, the Shah of Iran, Mohammad Reza Pahlavi, took a long deep breath and passed away. He had lost his long battle against a blood cancer which was kept a secret from his closest confidants and even his Queen, Farah Pahlavi, for years. Today marks the 42nd commemoration of the Shah´s death and even though the majority of the Iranians were born after the Isl

Iran och USA återgår nu till status quo

Status quo har nu uppstått mellan Iran och USA. Om inte Iran ger sig på amerikaner och om Donald Trump använder en mer de-eskalerande ton, kommer nästa milstolpe i denna konflikt i novembermånad när USA går till val.The conflict between Iran and the United States has escalated, but now they are returning to status quo.

“O, Shah of Iran, Return Back to Iran”

For 39 years the Islamic Republic have been in power in Iran. Millions of books, articles, movies, series, radio programs and speeches have been produced by the regime to demolish the Shah. For 39 years have the propaganda machines of the regime been active in tyrannizing the Shah. And yet, they have failed.

Assessment of groundwater safety surrounding contaminated water storage sites using multivariate statistical analysis and Heckman selection model: a case study of Kazakhstan

Petrochemical enterprises in Kazakhstan discharge polluted wastewater into special recipients. Contaminants infiltrate through the soil into the groundwater, which potentially affects public health and environment safety. This paper presents the evaluation of a 7-year monitoring program from one of the factories and includes nineteen variables from nine wells during 2013–2019. Several multivariate