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Dynamics of a Staphylococcus aureus infective endocarditis simulation model

Infective endocarditis (IE) is a serious infection of the inner surface of heart, resulting from minor lesions in the endocardium. The damage induces a healing reaction, which leads to recruitment of fibrin and immune cells. This sterile healing vegetation can be colonized during temporary bacteremia, inducing IE. We have previously established a novel in vitro IE model using a simulated IE vegeta

Review and consensus recommendations on clinical APT-weighted imaging approaches at 3T : Application to brain tumors

Amide proton transfer-weighted (APTw) MR imaging shows promise as a biomarker of brain tumor status. Currently used APTw MRI pulse sequences and protocols vary substantially among different institutes, and there are no agreed-on standards in the imaging community. Therefore, the results acquired from different research centers are difficult to compare, which hampers uniform clinical application an

Rapportering av projektet Forskares behov av lagringslösningar för forskningsdata – ett samarbete mellan SNIC, SND, SUNET, Chalmers tekniska högskola och Örebro universitet

Det svenska e-infrastrukturlandskapet är fragmenterat och trots rekommendationer från beslutsfattare så ökar fragmenteringen. De nationella aktörer som har uppdrag och/eller mandat som rör forskningsdata är främst SNIC, SND, och Sunet. Dessa aktörer tillhandahåller tjänster och stöd till forskare under olika delar av forskningsdatalivscykeln. På grund av de oklara mandat och uppdrag som råder nati

Direct and Legacy Effects of Spring Temperature Anomalies on Seasonal Productivity in Northern Ecosystems

Warmer or cooler spring in northern high latitudes will, for the most part, directly impact gross primary productivity (GPP) of ecosystems, but also carry consequences for the upcoming seasonal GPP. Spatiotemporal patterns of these legacy effects are still largely unknown but important for improving our understanding of how plant phenology is associated with vegetation dynamics. In this study, imp

Informal civil society initiatives in non-Western societies: mahallas in Uzbekistan

Despite the extensive literature on the nexus between civil society and democratization in non-democratic regimes, most existing scholarship focuses on politically oriented and claim-making civil society organizations. While these accounts provide useful insights, they appear to rely on Western-centric understandings of civil society. Undoubtedly, little space exists in non-democratic regimes with

Everyday Transnational Lives of Uzbek Migrants in Russia: A Socio-Legal Perspective

One of the key themes in this research field literature is migrants’ legal transnationalism, that is, how migrants’ pre-migratory cultural and normative repertoires influence their everyday lives and experiences in their host society. However, the existing studies on migrants’ legal transnationalism largely focus on the case studies of immigrant communities in the West, whereas there has been litt

Characterization of Occupational Lifting Patterns with Exposure Variation Analysis. Cross-sectional Workplace Study among Blue-Collar Workers

OBJECTIVES: To investigate and characterize the influence of sex, age, muscle strength, and cardiovascular fitness on manual lifting patterns using exposure variation analysis (EVA) during a full working day among blue-collar workers.METHODS: Muscular activity (surface electromyography [sEMG]) of the thigh, low-back, and shoulder was measured throughout the working day in 173 employees with manual

Prediction of local fixed charge density loss in cartilage following ACL injury and reconstruction : A computational proof-of-concept study with MRI follow-up

The purpose of this proof-of-concept study was to develop three-dimensional patient-specific mechanobiological knee joint models to simulate alterations in the fixed charged density (FCD) around cartilage lesions during the stance phase of the walking gait. Two patients with anterior cruciate ligament (ACL) reconstructed knees were imaged at 1 and 3 years after surgery. The magnetic resonance imag

Microcanonical entropy of the infinite-state potts model

In this investigation we show that the entropy of the two-dimensional infinite-state Potts model is linear in configurational energy in the thermodynamic limit. This is a direct consequence of the local convexity of the microcanonical entropy, associated with a finite system undergoing a first-order transition. For a sufficiently large number of states q, this convexity spans the entire energy ran

Expediting finite element analyses for subject‐specific studies of knee osteoarthritis : A literature review

Osteoarthritis (OA) is a degenerative disease that affects the synovial joints, especially the knee joint, diminishing the ability of patients to perform daily physical activities. Unfortunately, there is no cure for this nearly irreversible musculoskeletal disorder. Nowadays, many researchers aim for in silico‐based methods to simulate personalized risks for the onset and progression of OA and ev

Contributions to molecular phylogeny of lichens 3. • New monophyletic branches of the Trapeliaceae and Xylariaceae

Seven new genera, i.e. Brianiopsis for the former ‘Lambiella’ impavida group, Farkasiella for the former ‘Trapeliopsis’ aeneofusca group, Gallowayiopsis for the former ‘Trapelia’ collaris group, Kleopowiella for the former ‘Trapelia’ placodioides group, Trapegintarasia for the former ‘Trapelia’ lilacea group, Trapejamesia for the former ‘Trapelia’ corticola branch, as well as Xyloelixia for the fo

Material and technique development for ultrasound optical tomography using spectral hole burning filters

The molecular sensitivity provided by optical photons has potential advantages in medical diagnostics, for example, in distinguishing healthy from cancerous tissue. However, scattering resulting from inhomogeneities in the refractive index of tissues prevents spatially resolved optical measurements in biological material, except at very shallow depths. This thesis presents research on a medical im

Context matters : The importance of dimerization-induced conformation of the LukGH leukocidin of Staphylococcus aureus for the generation of neutralizing antibodies

LukGH (LukAB) is a potent leukocidin of Staphylococcus aureus that lyses human phagocytic cells and is thought to contribute to immune evasion. Unlike the other bi-component leukocidins of S. aureus, LukGH forms a heterodimer before binding to its receptor, CD11b expressed on professional phagocytic cells, and displays significant sequence variation. We employed a high diversity human IgG1 library

Cancer differentiating agent hexamethylene bisacetamide inhibits BET bromodomain proteins

Agents that trigger cell differentiation are highly efficacious in treating certain cancers, but such approaches are not generally effective in most malignancies. Compounds such as DMSO and hexamethylene bisacetamide (HMBA) have been used to induce differentiation in experimental systems, but their mechanisms of action and potential range of uses on that basis have not been developed. Here, we sho

Structure-function analysis of Heterodimer Formation, oligomerization, and receptor binding of the staphylococcus aureus bi-component toxin LukGH

The bi-component leukocidins of Staphylococcus aureus are important virulence factors that lyse human phagocytic cells and contribute to immune evasion. The γ-hemolysins (HlgAB and HlgCB) and Panton-Valentine leukocidin (PVL or LukSF) were shown to assemble from soluble subunits into membrane-bound oligomers on the surface of target cells, creating barrel-like pore structures that lead to cell lys

Structure and function of the radical enzyme ribonucleotide reductase

Ribonucleotide reductases (RNRs) catalyze all new production in nature of deoxyribonucleotides for DNA synthesis by reducing the corresponding ribonucleotides. The reaction involves the action of a radical that is produced differently for different classes of the enzyme. Class I enzymes, which are present in eukaryotes and microorganisms, use an iron center to produce a stable tyrosyl radical that

A glycyl radical site in the crystal structure of a class III ribonucleotide reductase

Ribonucleotide reductases catalyze the reduction of ribonucleotides to deoxyribonucleotides. Three classes have been identified, all using free- radical chemistry but based on different cofactors. Classes I and II have been shown to be evolutionarily related, whereas the origin of anaerobic class III has remained elusive. The structure of a class III enzyme suggests a common origin for the three c

Crystal structures of two self-hydroxylating ribonucleotide reductase protein R2 mutants : Structural basis for the oxygen-insertion step of hydroxylation reactions catalyzed by diiron proteins

The R2 protein of ribonucleotide reductase catalyzes the dioxygen- dependent one-electron oxidation of Tyr122 at a diiron-carboxylate site. Methane monooxygenase and related hydroxylases catalyze hydrocarbon hydroxylation at diiron sites structurally related to the one in R2. In protein R2, the likely reaction site for dioxygen is close to Phe208. The crystal structure of an iron ligand mutant R2,